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@313
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[313]
|
08/25/08 08:45:12 |
t |
updated for MSU course |
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@312
|
[312]
|
07/01/08 08:03:05 |
t |
updated with video link & paper ref |
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@311
|
[311]
|
05/05/08 10:57:51 |
t |
added some motif stuff |
|
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@310
|
[310]
|
05/05/08 10:08:06 |
t |
added motif searching, better zoom/translation |
|
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@309
|
[309]
|
05/05/08 03:00:08 |
t |
initial user interface |
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|
@308
|
[308]
|
05/04/08 00:37:34 |
t |
some initial useful scripts to load in the data |
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@307
|
[307]
|
05/03/08 20:36:24 |
t |
added vertex/ working space |
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@306
|
[306]
|
03/09/08 22:46:57 |
t |
more |
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@305
|
[305]
|
03/09/08 22:40:07 |
t |
another class project/hw |
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@303
|
[303]
|
02/05/08 09:19:57 |
t |
fixed motif scoring bug, rearranged deck chairs |
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@301
|
[301]
|
02/05/08 09:03:17 |
t |
reverse merge (why is this necessary !?) |
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@299
|
[299]
|
02/05/08 01:40:05 |
t |
fixed some size stuff; misc docstring updates. |
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|
@298
|
[298]
|
02/01/08 13:27:21 |
t |
fixed details for RawPWMMotifs |
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@297
|
[297]
|
02/01/08 01:39:40 |
t |
changed simple_key to consensus, simplified library display. am I done … |
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@296
|
[296]
|
02/01/08 01:25:30 |
t |
display consensus for imported motifs, too |
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@295
|
[295]
|
02/01/08 01:22:17 |
t |
fixed stupid searching NotImplementedError? |
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@294
|
[294]
|
02/01/08 01:20:00 |
t |
fixed batch export; commented out batch import. |
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|
@293
|
[293]
|
02/01/08 01:12:31 |
t |
JASPAR format parsing now works. |
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@292
|
[292]
|
02/01/08 01:11:55 |
t |
uncommon dup session error now just logs you out |
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@291
|
[291]
|
02/01/08 00:08:14 |
t |
added 'palindromic' flag. |
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|
@290
|
[290]
|
01/31/08 23:22:09 |
t |
a bit of sequence cleanup |
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|
@289
|
[289]
|
01/31/08 18:43:05 |
t |
added simple site soring system. |
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|
@288
|
[288]
|
01/31/08 03:30:31 |
t |
added in uniform statistics calculation, allowed user to set preferred A/T … |
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|
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@287
|
[287]
|
01/31/08 02:09:37 |
t |
cleaned up the motif dir a bit |
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@286
|
[286]
|
01/30/08 02:09:41 |
t |
miscellaneous cleanup; added "Raw PWM Motif" for imported motif types; … |
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@285
|
[285]
|
01/30/08 02:08:46 |
t |
changed assert to a (more informative) Exception |
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@284
|
[284]
|
01/30/08 01:25:59 |
t |
stopped doing the database drop & sped up tests dramatically. may cause … |
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@283
|
[283]
|
01/28/08 01:14:05 |
t |
added notes, color field (still unused), and 'combine' selectbox. |
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@282
|
[282]
|
01/28/08 00:43:11 |
t |
redirect to login page (with 'follow' URL) if session expires. w00t. |
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|
@281
|
[281]
|
01/26/08 23:02:35 |
t |
- added /style CSS;
- gussied up the canal.templates functions, added … |
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|
|
@280
|
[280]
|
01/22/08 22:32:01 |
t |
added batch export |
|
|
|
@279
|
[279]
|
01/21/08 23:59:50 |
t |
a number of minor fixes to the motif searching stuff, courtesy of erich. |
|
|
|
@278
|
[278]
|
01/21/08 00:11:02 |
t |
minor HTML changes; simple test(s) of the edit forms. |
|
|
|
@277
|
[277]
|
01/20/08 23:58:11 |
t |
finished adding edit capabilities. |
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|
|
@276
|
[276]
|
01/20/08 22:38:34 |
t |
added start/stop arguments to detail views |
|
|
|
@275
|
[275]
|
01/20/08 02:14:50 |
t |
minor cleanup & test fix |
|
|
|
@274
|
[274]
|
01/20/08 02:09:51 |
t |
added svn ignore on *.pyc |
|
|
|
@273
|
[273]
|
01/20/08 02:03:59 |
t |
fixed get_motifs; added PDF download. |
|
|
|
@272
|
[272]
|
01/20/08 01:49:16 |
t |
added bitmap display of motifs |
|
|
|
@271
|
[271]
|
01/19/08 03:21:05 |
t |
fixed e-mail fn test |
|
|
|
@270
|
[270]
|
01/19/08 03:15:45 |
t |
display/export PWM matches |
|
|
|
@269
|
[269]
|
01/19/08 02:51:20 |
t |
interface to build PWM from list of input sites |
|
|
|
@268
|
[268]
|
01/19/08 01:39:59 |
t |
some more tests |
|
|
|
@267
|
[267]
|
01/19/08 01:34:45 |
t |
some fixes, some tests. |
|
|
|
@266
|
[266]
|
01/19/08 01:09:31 |
t |
added simple motif search of a sequence |
|
|
|
@265
|
[265]
|
01/18/08 23:21:27 |
t |
basic motif library; right now, only IUPAC motifs |
|
|
|
@264
|
[264]
|
01/18/08 23:18:29 |
t |
quixote imports |
|
|
|
@263
|
[263]
|
01/18/08 23:15:42 |
t |
updated mailserver, e-mail addy |
|
|
|
@262
|
[262]
|
01/03/08 19:21:22 |
t |
length fix, I think |
|
|
|
@261
|
[261]
|
12/19/07 02:57:38 |
t |
start of a server-side motif library/searching interface |
|
|
|
@259
|
[259]
|
12/19/07 00:10:52 |
t |
added 'make_pfm', changed 'make_PWM' to 'make_pwm', switched to … |
|
|
|
@258
|
[258]
|
12/12/07 14:01:12 |
t |
some code for profiling |
|
|
|
@257
|
[257]
|
12/12/07 12:50:26 |
t |
doc renaming, updating a bit |
|
|
|
@256
|
[256]
|
12/12/07 12:37:42 |
t |
fixed find_exact and find_iupac examples |
|
|
|
@255
|
[255]
|
12/12/07 03:04:47 |
t |
removed debugging prints |
|
|
|
@254
|
[254]
|
12/12/07 03:00:51 |
t |
Added offsets into the mess; miscellaneous threading cleanup |
|
|
|
@253
|
[253]
|
12/12/07 01:51:26 |
t |
fixed a newly introduced memory leak & made tests work |
|
|
|
@252
|
[252]
|
12/12/07 01:35:18 |
t |
added a calc_score function to the python EnergyOperator?, + test;
added … |
|
|
|
@251
|
[251]
|
12/11/07 23:10:53 |
t |
added doctest intro, updated index |
|
|
|
@250
|
[250]
|
12/11/07 23:08:56 |
t |
removed requirement for setuptools |
|
|
|
@247
|
[247]
|
12/09/07 22:26:10 |
t |
updated test version requirement |
|
|
|
@246
|
[246]
|
12/09/07 22:22:50 |
t |
fixed? -fPIC requirement, courtesy of Humberto Ortiz-Zuazaga |
|
|
|
@245
|
[245]
|
12/09/07 22:17:21 |
t |
updated copyright notice |
|
|
|
@244
|
[244]
|
12/09/07 22:11:29 |
t |
added TODO item about running doctests; added a str function to both
PWMs … |
|
|
|
@243
|
[243]
|
12/09/07 17:09:42 |
t |
added build functions |
|
|
|
@242
|
[242]
|
12/09/07 15:55:37 |
t |
bumped version # to 0.8.1 |
|
|
|
@241
|
[241]
|
12/09/07 15:38:44 |
t |
added _motility.find_exact, fixed minimum value calculation to properly … |
|
|
|
@240
|
[240]
|
11/12/07 00:21:17 |
t |
fixed by Humberto Ortiz Zuazaga for compiling just motility. |
|
|
|
@239
|
[239]
|
09/25/07 23:41:50 |
t |
fixed README typo; fixed variable rename in test-queue; included test for … |
|
|
|
@237
|
[237]
|
07/16/07 11:51:53 |
t |
Web site updated |
|
|
|
@235
|
[235]
|
05/28/07 13:14:16 |
t |
removed biopython 'require', quixote 'require'. |
|
|
|
@233
|
[233]
|
05/28/07 12:52:30 |
t |
added thirdparty tag to some new tests that require external binaries |
|
|
|
@232
|
[232]
|
05/28/07 12:48:20 |
t |
bumped version number |
|
|
|
@231
|
[231]
|
05/28/07 11:28:22 |
t |
debugged nasty object manager bug; refactored some test code; added in … |
|
|
|
@230
|
[230]
|
05/28/07 11:25:46 |
t |
ignore build stuff |
|
|
|
@229
|
[229]
|
05/28/07 11:25:03 |
t |
added documentation, build file ignore |
|
|
|
@228
|
[228]
|
05/27/07 16:14:04 |
t |
switched over to using my own blastparser, instead of BioPython?'s. … |
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|
|
@227
|
[227]
|
05/27/07 13:40:50 |
t |
simplified BLAST analysis page a bit; added in a 'dump' debugging … |
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|
|
@226
|
[226]
|
05/27/07 12:36:09 |
t |
EditBlast?.init now properly calls BaseEditHandler?.init; added in
a … |
|
|
|
@225
|
[225]
|
05/27/07 12:34:01 |
t |
added 'force' option to 'hide folder' function, for test purposes |
|
|
|
@224
|
[224]
|
05/27/07 12:33:39 |
t |
generalized ConfigParser? error handler |
|
|
|
@223
|
[223]
|
05/27/07 12:00:40 |
t |
added show_command option |
|
|
|
@222
|
[222]
|
05/26/07 16:12:14 |
t |
added a few more tests for the seqcomp export functionality. |
|
|
|
@221
|
[221]
|
05/26/07 15:56:03 |
t |
initial seqcomp analysis export code. |
|
|
|
@220
|
[220]
|
05/26/07 15:55:25 |
t |
added (and then commented out) 'exit_after_requests' parameter. |
|
|
|
@219
|
[219]
|
05/26/07 15:45:45 |
t |
some basic dependency/version tests; included paircomp. |
|
|
|
@218
|
[218]
|
05/25/07 16:47:56 |
t |
added an iterator interface to Comparison, and added slots to … |
|
|
|
@217
|
[217]
|
05/23/07 21:00:46 |
t |
added generic Publisher/FCGI cleanup hook; maybe SCGI will even pay … |
|
|
|
@215
|
[215]
|
05/23/07 14:10:50 |
t |
added a more informative message than "it failed" when trying to add
an … |
|
|
|
@214
|
[214]
|
04/04/07 10:44:14 |
t |
Fixed an exception-handling problem & cleaned up some free->delete issues. |
|
|
|
@212
|
[212]
|
03/30/07 17:34:53 |
t |
updated cygwin1.dll to match that of the compile server |
|
|
|
@211
|
[211]
|
03/30/07 16:58:12 |
t |
fixed EOL problem in dist-making script. |
|
|
|
@209
|
[209]
|
03/30/07 10:56:44 |
t |
added in some assertion checking for dna sequence type |
|
|
|
@208
|
[208]
|
03/29/07 17:31:51 |
t |
removed vista analysis; fixed problem with non-empty queue in … |
|
|
|
@207
|
[207]
|
03/29/07 16:55:48 |
t |
added in size display hack, with (some) tests for pairwise analysis views. |
|
|
|
@206
|
[206]
|
03/28/07 14:16:58 |
t |
Fixed bug that Carolina/Mando identified in the XML-RPC API, server-side, … |
|
|
|
@205
|
[205]
|
03/28/07 14:15:48 |
t |
added auto-generated Makefile to .svnignore |
|
|
|
@203
|
[203]
|
03/28/07 11:58:08 |
t |
removed extraneous message |
|
|
|
@202
|
[202]
|
03/28/07 11:57:15 |
t |
removed extraneous message |
|
|
|
@201
|
[201]
|
03/28/07 11:16:14 |
t |
Added i386/ppc Xerces dylib; edited make-macosx.sh script to … |
