|
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@303
|
[303]
|
02/05/08 09:19:57 |
t |
fixed motif scoring bug, rearranged deck chairs |
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@301
|
[301]
|
02/05/08 09:03:17 |
t |
reverse merge (why is this necessary !?) |
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@298
|
[298]
|
02/01/08 13:27:21 |
t |
fixed details for RawPWMMotifs |
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@297
|
[297]
|
02/01/08 01:39:40 |
t |
changed simple_key to consensus, simplified library display. am I done … |
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@296
|
[296]
|
02/01/08 01:25:30 |
t |
display consensus for imported motifs, too |
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@295
|
[295]
|
02/01/08 01:22:17 |
t |
fixed stupid searching NotImplementedError? |
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@294
|
[294]
|
02/01/08 01:20:00 |
t |
fixed batch export; commented out batch import. |
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@293
|
[293]
|
02/01/08 01:12:31 |
t |
JASPAR format parsing now works. |
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@292
|
[292]
|
02/01/08 01:11:55 |
t |
uncommon dup session error now just logs you out |
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|
|
@291
|
[291]
|
02/01/08 00:08:14 |
t |
added 'palindromic' flag. |
|
|
|
@290
|
[290]
|
01/31/08 23:22:09 |
t |
a bit of sequence cleanup |
|
|
|
@289
|
[289]
|
01/31/08 18:43:05 |
t |
added simple site soring system. |
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|
@288
|
[288]
|
01/31/08 03:30:31 |
t |
added in uniform statistics calculation, allowed user to set preferred A/T … |
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@287
|
[287]
|
01/31/08 02:09:37 |
t |
cleaned up the motif dir a bit |
|
|
|
@286
|
[286]
|
01/30/08 02:09:41 |
t |
miscellaneous cleanup; added "Raw PWM Motif" for imported motif types; … |
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|
|
@285
|
[285]
|
01/30/08 02:08:46 |
t |
changed assert to a (more informative) Exception |
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@284
|
[284]
|
01/30/08 01:25:59 |
t |
stopped doing the database drop & sped up tests dramatically. may cause … |
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|
|
@283
|
[283]
|
01/28/08 01:14:05 |
t |
added notes, color field (still unused), and 'combine' selectbox. |
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|
|
@282
|
[282]
|
01/28/08 00:43:11 |
t |
redirect to login page (with 'follow' URL) if session expires. w00t. |
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|
|
@281
|
[281]
|
01/26/08 23:02:35 |
t |
- added /style CSS;
- gussied up the canal.templates functions, added … |
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|
|
@280
|
[280]
|
01/22/08 22:32:01 |
t |
added batch export |
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|
|
@279
|
[279]
|
01/21/08 23:59:50 |
t |
a number of minor fixes to the motif searching stuff, courtesy of erich. |
|
|
|
@278
|
[278]
|
01/21/08 00:11:02 |
t |
minor HTML changes; simple test(s) of the edit forms. |
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|
|
@277
|
[277]
|
01/20/08 23:58:11 |
t |
finished adding edit capabilities. |
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|
|
@276
|
[276]
|
01/20/08 22:38:34 |
t |
added start/stop arguments to detail views |
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|
|
@275
|
[275]
|
01/20/08 02:14:50 |
t |
minor cleanup & test fix |
|
|
|
@274
|
[274]
|
01/20/08 02:09:51 |
t |
added svn ignore on *.pyc |
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|
|
@273
|
[273]
|
01/20/08 02:03:59 |
t |
fixed get_motifs; added PDF download. |
|
|
|
@272
|
[272]
|
01/20/08 01:49:16 |
t |
added bitmap display of motifs |
|
|
|
@271
|
[271]
|
01/19/08 03:21:05 |
t |
fixed e-mail fn test |
|
|
|
@270
|
[270]
|
01/19/08 03:15:45 |
t |
display/export PWM matches |
|
|
|
@269
|
[269]
|
01/19/08 02:51:20 |
t |
interface to build PWM from list of input sites |
|
|
|
@268
|
[268]
|
01/19/08 01:39:59 |
t |
some more tests |
|
|
|
@267
|
[267]
|
01/19/08 01:34:45 |
t |
some fixes, some tests. |
|
|
|
@266
|
[266]
|
01/19/08 01:09:31 |
t |
added simple motif search of a sequence |
|
|
|
@265
|
[265]
|
01/18/08 23:21:27 |
t |
basic motif library; right now, only IUPAC motifs |
|
|
|
@264
|
[264]
|
01/18/08 23:18:29 |
t |
quixote imports |
|
|
|
@263
|
[263]
|
01/18/08 23:15:42 |
t |
updated mailserver, e-mail addy |
|
|
|
@261
|
[261]
|
12/19/07 02:57:38 |
t |
start of a server-side motif library/searching interface |
|
|
|
@239
|
[239]
|
09/25/07 23:41:50 |
t |
fixed README typo; fixed variable rename in test-queue; included test for … |
|
|
|
@235
|
[235]
|
05/28/07 13:14:16 |
t |
removed biopython 'require', quixote 'require'. |
|
|
|
@233
|
[233]
|
05/28/07 12:52:30 |
t |
added thirdparty tag to some new tests that require external binaries |
|
|
|
@231
|
[231]
|
05/28/07 11:28:22 |
t |
debugged nasty object manager bug; refactored some test code; added in … |
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|
|
@228
|
[228]
|
05/27/07 16:14:04 |
t |
switched over to using my own blastparser, instead of BioPython?'s. … |
|
|
|
@227
|
[227]
|
05/27/07 13:40:50 |
t |
simplified BLAST analysis page a bit; added in a 'dump' debugging … |
|
|
|
@226
|
[226]
|
05/27/07 12:36:09 |
t |
EditBlast?.init now properly calls BaseEditHandler?.init; added in
a … |
|
|
|
@225
|
[225]
|
05/27/07 12:34:01 |
t |
added 'force' option to 'hide folder' function, for test purposes |
|
|
|
@224
|
[224]
|
05/27/07 12:33:39 |
t |
generalized ConfigParser? error handler |
|
|
|
@223
|
[223]
|
05/27/07 12:00:40 |
t |
added show_command option |
|
|
|
@222
|
[222]
|
05/26/07 16:12:14 |
t |
added a few more tests for the seqcomp export functionality. |
|
|
|
@221
|
[221]
|
05/26/07 15:56:03 |
t |
initial seqcomp analysis export code. |
|
|
|
@220
|
[220]
|
05/26/07 15:55:25 |
t |
added (and then commented out) 'exit_after_requests' parameter. |
|
|
|
@219
|
[219]
|
05/26/07 15:45:45 |
t |
some basic dependency/version tests; included paircomp. |
|
|
|
@217
|
[217]
|
05/23/07 21:00:46 |
t |
added generic Publisher/FCGI cleanup hook; maybe SCGI will even pay … |
|
|
|
@215
|
[215]
|
05/23/07 14:10:50 |
t |
added a more informative message than "it failed" when trying to add
an … |
|
|
|
@209
|
[209]
|
03/30/07 10:56:44 |
t |
added in some assertion checking for dna sequence type |
|
|
|
@208
|
[208]
|
03/29/07 17:31:51 |
t |
removed vista analysis; fixed problem with non-empty queue in … |
|
|
|
@207
|
[207]
|
03/29/07 16:55:48 |
t |
added in size display hack, with (some) tests for pairwise analysis views. |
|
|
|
@206
|
[206]
|
03/28/07 14:16:58 |
t |
Fixed bug that Carolina/Mando identified in the XML-RPC API, server-side, … |
|
|
|
@194
|
[194]
|
03/25/07 13:24:23 |
t |
fixed test-queue path problem & switched it over to using … |
|
|
|
@193
|
[193]
|
03/25/07 12:36:38 |
t |
moved 'tests2' into 'tests' |
|
|
|
@192
|
[192]
|
03/25/07 12:35:34 |
t |
removed old tests |
|
|
|
@191
|
[191]
|
03/25/07 12:34:28 |
t |
moved the remaining 'test/' tests into the nose tests under 'tests2'. |
|
|
|
@190
|
[190]
|
03/25/07 11:29:05 |
t |
Shifted 'base' tests into the nosetests directory. |
|
|
|
@189
|
[189]
|
03/24/07 15:30:54 |
t |
converted to using subprocess. |
|
|
|
@186
|
[186]
|
03/24/07 09:20:31 |
t |
trapped traceback.print_exc() output to stdout instead of stderr, so … |
|
|
|
@185
|
[185]
|
03/24/07 09:19:35 |
t |
cleaned up subprocess stuff to use communicate() |
|
|
|
@177
|
[177]
|
03/23/07 21:28:20 |
t |
whole-tree cleanup of ignore files (.cvsignore => .svnignore), plus … |
|
|
|
@170
|
[170]
|
02/26/07 21:34:34 |
t |
minor mods to n-way testing |
|
|
|
@169
|
[169]
|
02/26/07 21:33:29 |
t |
print tracebacks on xml-rpc errors |
|
|
|
@148
|
[148]
|
02/14/07 00:13:09 |
t |
whoops, slight + omission |
|
|
|
@147
|
[147]
|
02/08/07 14:00:20 |
t |
fixed wonky subprocess problem with blocking I/O that only occured on
the … |
|
|
|
@146
|
[146]
|
02/08/07 12:49:02 |
t |
made errors in postgresql setup more clear |
|
|
|
@145
|
[145]
|
02/08/07 12:34:05 |
t |
automatically find canalAPI if it's in an obvious place, otherwise … |
|
|
|
@143
|
[143]
|
02/07/07 17:43:08 |
t |
fixed try/finally bugaboo |
|
|
|
@127
|
[127]
|
01/16/07 17:56:09 |
t |
got XML-RPC API tests working, too. |
|
|
|
@125
|
[125]
|
01/16/07 13:50:25 |
t |
cleaned up a bunch of stuff related to website teardown. |
|
|
|
@124
|
[124]
|
01/15/07 22:21:30 |
t |
added client API tests into server tests |
|
|
|
@123
|
[123]
|
01/15/07 22:11:54 |
t |
moved inprocess testing utils over to client code |
|
|
|
@121
|
[121]
|
01/15/07 20:16:56 |
t |
fixed catalog problem with new postgresql |
|
|
|
@120
|
[120]
|
01/15/07 20:10:59 |
t |
added load-test.sql |
|
|
|
@117
|
[117]
|
01/15/07 17:42:35 |
t |
implemented add_blastz and add_lagan_vista analysis stuff for XML-RPC. |
|
|
|
@102
|
[102]
|
12/29/06 23:31:23 |
t |
simple blastz/lagan-vista analysis test |
|
|
|
@87
|
[87]
|
12/05/06 08:30:47 |
t |
added test for valid/invalid BLAST program |
|
|
|
@76
|
[76]
|
11/27/06 00:42:09 |
t |
basic n-way Web interface is working & tested |
|
|
|
@73
|
[73]
|
11/25/06 00:13:39 |
t |
initial code for n-way comparisons |
|
|
|
@60
|
[60]
|
11/22/06 23:16:28 |
t |
broke the in-process stuff out into a library file, added a pairwise … |
|
|
|
@58
|
[58]
|
11/22/06 12:39:25 |
t |
add authentication |
|
|
|
@56
|
[56]
|
11/22/06 12:34:04 |
t |
get API version via xmlrpc |
|
|
|
@55
|
[55]
|
11/22/06 12:31:21 |
t |
added in xmlrpc test framework |
|
|
|
@54
|
[54]
|
11/22/06 11:42:46 |
t |
final reorg of web tests |
|
|
|
@53
|
[53]
|
11/22/06 11:19:43 |
t |
moved user setup/teardown code into package init |
|
|
|
@52
|
[52]
|
11/22/06 11:15:06 |
t |
moved |
|
|
|
@49
|
[49]
|
11/18/06 23:01:52 |
t |
more tests; *.pyc ignores |
|
|
|
@48
|
[48]
|
11/18/06 21:59:23 |
t |
the beginnings of a functional testing suite for cartwheel. hooray! |
|
|
|
@47
|
[47]
|
11/18/06 15:16:36 |
t |
set executable |
|
|
|
@46
|
[46]
|
11/18/06 15:04:49 |
t |
set executable flag on resubmit-incomplete-jobs |
|
|
|
@45
|
[45]
|
11/18/06 15:03:30 |
t |
fixed abort problem |
|
|
|
@44
|
[44]
|
11/18/06 14:57:06 |
t |
fixed a find_patch problem with reverse orientation; added require … |
|
|
|
@41
|
[41]
|
11/16/06 11:25:55 |
t |
added resubmit-incomplete-jobs |
